Communication is a critical part of science and education.
Below you will find a list of my: |
Peer Reviewed
In Preparation
- Oliver JP, Schilling JS. Fungal community dynamics in a gas-phase biofilter treating livestock production emissions.
- Oliver JP, Hurst J, Gooch CA, Stappenbeck A, Sassoubre L. (2021). On-farm screw-press/rotary drum treatment of dairy manure associated antibiotic residues and resistance. J. Environ. Qual. 50(1):134-143
- Oliver JP, Gooch CA, Hurst JJ, Schueler J, Lansing S, Sassoubre L, Crossette E, Aga DS. (2020). Fate of antibiotic residues, resistant bacteria and resistance genes in the manure management systems of US dairy operations. J. Dairy Sci. 103(2):1051-1071 *Invited review
- Hurst JJ, Oliver JP, Crossette E, Schueler J, Gooch C, Lansing S, Wigginton K, Raskin L, Aga DS & Sassoubre L. (2019). Trends in antimicrobial resistance genes among untreated and long-term storage dairy manure across US farms with comparisons to antimicrobial usage and residual concentrations Target journal: Environmental Science & Technology. 53(5):2405-2415.
- Oliver JP, Schueler J, Lansing S, Gooch CA & Aga DS. (2018). Quantifying the performance of manure management systems at 11 Northeastern US dairy farms. Applied Engineering in Agriculture. 34(6): 973-1000.
- Oliver JP & Schilling JS. (2018). Harnessing fungi to mitigate CH4 in natural and engineered systems. Appl. Microbiol. Biotechnol. 102(17): 7365–7375.
- Oliver JP, Schilling JS. 2016. Capture of methane by biofilter fungi – Evidence from laboratory-scale biofilter and chromatographic isotherm studies. Trans. ASABE 59(6): 1791-1801 *Special issue on climate change (PDF)
- Oliver JP, Janni KA, Schilling JS. 2016. Bait and scrape: An approach for assessing biofilm microbial communities on organic media used for gas-phase biofiltration. Ecological Engineering 91:50-57 (PDF)
- Oliver JP, Schilling JS. 2015. Applying trait-function relationships for microbial plant decomposition to predict media longevity in engineered bioreactors. Applied Microbiology and Biotechnology 100(6): 2843-2853. (PDF)
- Oliver JP. 2015. Book Review: Mushrooms of the Midwest, Michael Kuo and Andrew S. Methven. In: A Prairie Naturalist, South Dakota State University (PDF).
- Janni KA, Jacobsen LD, Hetchler BP, Oliver JP, Johnston L. 2014. Semi-continuous air sampling versus 24-hour bag samples to evaluate biofilters on a swine nursery in warm weather. Transactions of the ASABE. 57(5): 1501-1515 (PDF)
- Oliver JP, Perkins J, Jellison J. 2010. Effect of fungal pretreatment of wood on successional decay by several inky cap mushroom species. International Biodeterioration & Biodegradation 64:646-651 (PDF)
Meeting Publications
Oliver JP, Hurst JJ, Schuller J, Crossette EM, Gooch CA, Sassoubre L, Lansing S, Raskin L, Wigginton KR & Aga DS. Antibiotic resistance in dairy manure treatment systems. 2nd Annual Antimicrobial Resistance Symposium. Weill Cornell Medicine, New York, NY. March 8-9, 2018.
Lansing S, Oliver J, Schueler J, Gooch C, Felton G, Raskin L, Wigginton K, Crossette E, Langenfeld K, Sassoubre L, Hurst J & Aga D. The effect of manure collection and inherent variability on antibiotic testing of dairy manure systems. 4th International Symposium on the Environmental Dimension of Antibiotic Resistance Lansing, MI. Aug. 13–17, 2017.
Sassoubre L, Alcazaren K, Hurst J, Oliver J, Aga D & Davis B. Investigating the effect of high-calcium quicklime treatment on bacteria and antimicrobial resistance genes in dairy manure solids. 4th International Symposium on the Environmental Dimension of Antibiotic Resistance, Lansing, MI. Aug. 13–17, 2017.
Hurst J, Oliver J, Schueler J, Lansing S, Gooch C, Sassoubre L & Aga D. Assessing dairy manure management strategies for removal of antimicrobials. 4th International Symposium on the Environmental Dimension of Antibiotic Resistance, Lansing, MI. Aug. 13–17, 2017.
Oliver JP, Schueler J, Hurst J, Crossette E, Langenfeld K, Gooch C, Lansing S, Felton G, Wigginton K, Raskin L, Sassoubre L, Aga D. 2017. Antibiotics and antibiotic resistant bacteria and genes in northeastern dairy manure management systems – Project overview and preliminary findings from an 11 farm case study. ASABE International Meeting, Spokane, Washington (PDF)
Oliver JP, Gooch C. 2017. Effectiveness of different dairy manure management practices in controlling the spread of antibiotics and antibiotic resistance. Waste-to-Worth Annual Conference, Cary, NC. Apr. 18-21, 2017 (Link to proceedings)
Oliver JP, Schilling JS. 2015. Capture of methane by biofilter fungi - A chromatographic isotherm study (#2121469). ASABE 1st Climate Change Symposium: Adaptation and Mitigation, Chicago, Illinois, USA, May 3-5, 2015 (PDF)
Janni KA, Jacobson LD, Hetchler BP, Oliver JP, Johnston LJ. 2013 Comparing semi-continuous air sampling versus 24-hour bag samples to monitor gas emissions and treatment from a swine nursery with biofilters. ASABE Annual International Meeting, Kansas City, Missouri, July 21-24, 2013. doi: http://dx.doi.org/10.13031/aim.20131605534
Janni KA, Jacobson LD, Hetchler BP, Oliver JP, Johnston LJ. 2012. Comparing semi-continuous air sampling versus 24-hour bag samples from two flat-bed biofilters with new woodchip media. ASABE Annual International Meeting, Dallas, Texas, July 29-August 1, 2012. doi: 10.13031/2013.41824
Lansing S, Oliver J, Schueler J, Gooch C, Felton G, Raskin L, Wigginton K, Crossette E, Langenfeld K, Sassoubre L, Hurst J & Aga D. The effect of manure collection and inherent variability on antibiotic testing of dairy manure systems. 4th International Symposium on the Environmental Dimension of Antibiotic Resistance Lansing, MI. Aug. 13–17, 2017.
Sassoubre L, Alcazaren K, Hurst J, Oliver J, Aga D & Davis B. Investigating the effect of high-calcium quicklime treatment on bacteria and antimicrobial resistance genes in dairy manure solids. 4th International Symposium on the Environmental Dimension of Antibiotic Resistance, Lansing, MI. Aug. 13–17, 2017.
Hurst J, Oliver J, Schueler J, Lansing S, Gooch C, Sassoubre L & Aga D. Assessing dairy manure management strategies for removal of antimicrobials. 4th International Symposium on the Environmental Dimension of Antibiotic Resistance, Lansing, MI. Aug. 13–17, 2017.
Oliver JP, Schueler J, Hurst J, Crossette E, Langenfeld K, Gooch C, Lansing S, Felton G, Wigginton K, Raskin L, Sassoubre L, Aga D. 2017. Antibiotics and antibiotic resistant bacteria and genes in northeastern dairy manure management systems – Project overview and preliminary findings from an 11 farm case study. ASABE International Meeting, Spokane, Washington (PDF)
Oliver JP, Gooch C. 2017. Effectiveness of different dairy manure management practices in controlling the spread of antibiotics and antibiotic resistance. Waste-to-Worth Annual Conference, Cary, NC. Apr. 18-21, 2017 (Link to proceedings)
Oliver JP, Schilling JS. 2015. Capture of methane by biofilter fungi - A chromatographic isotherm study (#2121469). ASABE 1st Climate Change Symposium: Adaptation and Mitigation, Chicago, Illinois, USA, May 3-5, 2015 (PDF)
Janni KA, Jacobson LD, Hetchler BP, Oliver JP, Johnston LJ. 2013 Comparing semi-continuous air sampling versus 24-hour bag samples to monitor gas emissions and treatment from a swine nursery with biofilters. ASABE Annual International Meeting, Kansas City, Missouri, July 21-24, 2013. doi: http://dx.doi.org/10.13031/aim.20131605534
Janni KA, Jacobson LD, Hetchler BP, Oliver JP, Johnston LJ. 2012. Comparing semi-continuous air sampling versus 24-hour bag samples from two flat-bed biofilters with new woodchip media. ASABE Annual International Meeting, Dallas, Texas, July 29-August 1, 2012. doi: 10.13031/2013.41824
Technical Presentations
(* poster, ♦ invited)
Oliver JP. Using “Earth Cups” and fossils to teach relatively dating of rocks. Teaching workshop for SUNY Cortland. AED 442: Teaching the Sciences in Middle and Secondary Schools April 26, 2021.
Oliver JP. Mycology - Having fun teaching with fungi. Selected teaching workshop. 2020 New York Association for Agricultural Educators Virtual Conference. June 22-24, 2020.
♦Oliver JP. Drug use on the farm and antibiotic resistance in raw, stored and treated manures. Dairy Practices Council. 48th Annual Meeting. Buffalo, NY. November 8-10 2017.
♦Oliver JP, Gooch CA. Biogas scrubbing-technologies, efficacy & economics. Dairy Practices Council. 48th Annual Meeting. Buffalo, NY. November 8-10 2017.
*Lansing S, Oliver J, Schueler J, Gooch C, Felton G, Raskin L, Wigginton K, Crossette E, Langenfeld K, Sassoubre L, Hurst J, Aga D. The effect of manure collection and inherent variability on antibiotic testing of dairy manure systems. 4th International Symposium on the Environmental Dimension of Antibiotic Resistance
Lansing, MI. Aug. 13–17 2017
*Sassoubre L, Alcazaren K, Hurst J, Oliver J, Aga D, Davis B. Investigating the effect of lime treatment on bacteria and antimicrobial resistance genes in dairy manure solids. 4th International Symposium on the Environmental Dimension of Antibiotic Resistance, Lansing, MI. Aug. 13–17 2017
*Hurst J, Oliver J, Schueler J, Lansing S, Gooch C, Sassoubre L, Aga D. Assessing dairy manure management strategies for removal of antimicrobials. 4th International Symposium on the Environmental Dimension of Antibiotic Resistance, Lansing, MI. Aug. 13–17 2017
Oliver JP, Schueler J, Hurst J, Crossette E, Langenfeld K, Gooch C, Lansing S, Felton G, Wigginton K, Raskin L, Sassoubre L, Aga D. Antibiotics & antibiotic resistant bacteria and genes in northeastern dairy manure management systems – Project overview and preliminary findings from an 11 farm case study. Annual ASABE International Meeting. Spokane, WA. July 16-19, 2017
Oliver JP, Wright P, Gooch C. Estimating the economic value of the GHG emission reductions associated with on-farm dairy manure AD systems in NYS. Annual ASABE International Meeting. Spokane, WA. July 16-19, 2017
Oliver JP, Gooch CA. Effectiveness of dairy manure management practices at controlling antimicrobial resistance. Waste-to-Worth Annual Conference. Cary, NC. Apr. 18-21, 2017 (Video)
Oliver JP, Gooch CA. Effectiveness of dairy manure management practices at controlling antimicrobial resistance. Biocycle East Coast. Baltimore, MD. Apr. 4-7, 2017
Oliver JP Gooch CA. Antibiotic resistance and dairy manure systems. Dairy Center of Excellence, Cornell, Ithaca, NY. Mar. 20, 2017 *Invited
♦Oliver, J.P. Antimicrobial resistance from dairy farms: Evaluating the potential of manure management practices to control its spread. Agriculture, Food & Environmental systems In-Service Meeting, Ithaca, NY. Nov. 1-3, 2016.
Oliver J.P. Use of microbial communities to clean agricultural emissions/effluents. Dept. Biological & Environmental Engineering Seminar Series. Sept. 7, 2016.
♦Oliver, J.P. Manure treatment and antibacterial impacts. Applied Agricultural Engineering Continuing Education Series, Spring 2016 - Session No. 14. May 18th, 2016
Oliver J.P. Role of fungi in the biofiltration of livestock housing and manure storage emissiosn. PhD defense seminar. Aug 18th, 2015.
Oliver, J.P., J.S. Schilling. Capture of CH4 by biofilter fungi: A chromatographic isotherm study. ASABE 1st Climate Change Symposium, Adaption and Mitigation. Chicago, IL. May 3-5, 2015.
*Oliver, J.P., L.D. Jacobson, K.A. Janni, J.S. Schilling. Seed Grant: Microbial analyses to better target integrated efforts for methane (CH4) biofiltration in livestock systems. USDA-NIFA, Agricultural Science for Climate Variability and Change, Project Directors Meeting. Washington, DC. April 7-9, 2015
♦Oliver JP, Janni KA, Schilling JS. Biofilters: The Biofilm Perspective. Iowa State University Biofilter Conference. Ames, IA. August 20th, 2014
*Mickelson E, Oliver JP, Janni KA, Schilling JS. Investigating the relationships between varying filter media and microbial populations in biofiltration processes - Testing nitrogen as a potential driver for differences in biofilter media decay rates. Mycological Society of America Annual Meeting. East Lansing, MI. June 8-12, 2014.
*Oliver JP, Janni KA, Schilling JS. Developing a qPCR approach to monitor fungal dominance in biofilms colonizing wood chip biofilters. Mycological Society of America Annual Meeting. East Lansing, MI. June 8-12, 2014.
Oliver JP, Janni KA, Schilling JS. Mycelium in the biofilter - Accessing fungal dynamics in wood chip biofilters treating livestock emissions. American Ecological Engineering Society Annual Meeting. Charleston, SC. June 9-11, 2014
♦Oliver, J.P. Don’t waste it…Decay it! Growing edible mushrooms on yard and farm wastes. 20th Annual University of Minnesota, Southern Research and Outreach Center Horticultural Day. Waseca, MN. March 8, 2014
*Oliver JP, Jacobson LD, Janni KA, Schilling JS. Seed Grant: Microbial analyses to better target integrated efforts for methane biofiltration in livestock systems. USDA-NIFA, Agricultural Science for Climate Variability and Change, Project Directors Meeting. Jan. 6-9, 2014
*Schilling JS, Oliver JP, Jacobson LD, Janni KA. Seed Grant: Microbial analyses to better target integrated efforts for methane biofiltration in livestock systems. USDA-NIFA, Agricultural Science for Climate Variability and Change, Project Directors Meeting. Jan. 6-9, 2014
*Oliver JP, Janni KA, Jacobson LP, Schilling JS. Rot & Stench - Longevity and odor abatement potential of various biofilter media. UMN-BBE Departmental Symposium. Oct. 18, 2013
Oliver JP, Janni KA, Schilling JS. The role of fungi in biofiltration of livestock emissions - Full-scale and bench-scale observations. Ecological Society of America Annual Meeting. Minneapolis, MN. Aug. 4-9, 2013.
Oliver JP. What role do fungi have in the biofiltration of livestock emissions? Novel approaches to measure their presence and test their performance. 1st Annual Natural Resources Association of Graduate Students Research Symposium. University of Minnesota, Saint Paul, MN. April 12, 2013.
♦Oliver JP. Wood chips and microbes can deodorize livestock emissions, but how? A new approach to link biofilter microbial ecology to emissions reductions. USDA-Forest Service - Northern Research Station. Grand Rapids, MN
*Oliver JP, Schilling JS, Janni KA. Manure gas eating microbes - Fungal & bacterial biomass in livestock emission biofilter media ‘A surface area approach’. Mycological Society of America Annual Meeting. New Haven, CT. July 15-18, 2012
*Oliver J, Schilling J. Fishin’ Chips: Characterizing the Role of Fungi in Gas-Phase Wood Chip Biofilters. Mycological Society of America (MSA) Annual Meeting. Fairbanks, Alaska, Aug. 2-5, 2011.
Oliver J, Jellison J. 2008. Wood Decay Physiology of the Inky Cap Fungi. Mycological Society of America (MSA) Annual Meeting. State College, Pennsylvania. August 9-14, 2007
*Hastrup AC, Oliver J, Howell C, Jellison J. 2007. Variation in Oxalate and Oxalate Decarboxylase Produced by Six Species of Brown and White Rot Fungi. Joint meeting of Latvian State Institute of Wood Chemistry, International Biodeterioration & Biodegradation Society (IBBS), Federation of European Microbiological Societies (FEMS). Riga, Latvia. August 26-29, 2007.
*Oliver J, Jellison J. 2007. A study of the Fungi Coprinaceae for Bioremediation Potential. Mycological Society of America (MSA) Annual Meeting. Baton Rouge, Louisiana. August 5-9, 2007.
Oliver JP. Using “Earth Cups” and fossils to teach relatively dating of rocks. Teaching workshop for SUNY Cortland. AED 442: Teaching the Sciences in Middle and Secondary Schools April 26, 2021.
Oliver JP. Mycology - Having fun teaching with fungi. Selected teaching workshop. 2020 New York Association for Agricultural Educators Virtual Conference. June 22-24, 2020.
♦Oliver JP. Drug use on the farm and antibiotic resistance in raw, stored and treated manures. Dairy Practices Council. 48th Annual Meeting. Buffalo, NY. November 8-10 2017.
♦Oliver JP, Gooch CA. Biogas scrubbing-technologies, efficacy & economics. Dairy Practices Council. 48th Annual Meeting. Buffalo, NY. November 8-10 2017.
*Lansing S, Oliver J, Schueler J, Gooch C, Felton G, Raskin L, Wigginton K, Crossette E, Langenfeld K, Sassoubre L, Hurst J, Aga D. The effect of manure collection and inherent variability on antibiotic testing of dairy manure systems. 4th International Symposium on the Environmental Dimension of Antibiotic Resistance
Lansing, MI. Aug. 13–17 2017
*Sassoubre L, Alcazaren K, Hurst J, Oliver J, Aga D, Davis B. Investigating the effect of lime treatment on bacteria and antimicrobial resistance genes in dairy manure solids. 4th International Symposium on the Environmental Dimension of Antibiotic Resistance, Lansing, MI. Aug. 13–17 2017
*Hurst J, Oliver J, Schueler J, Lansing S, Gooch C, Sassoubre L, Aga D. Assessing dairy manure management strategies for removal of antimicrobials. 4th International Symposium on the Environmental Dimension of Antibiotic Resistance, Lansing, MI. Aug. 13–17 2017
Oliver JP, Schueler J, Hurst J, Crossette E, Langenfeld K, Gooch C, Lansing S, Felton G, Wigginton K, Raskin L, Sassoubre L, Aga D. Antibiotics & antibiotic resistant bacteria and genes in northeastern dairy manure management systems – Project overview and preliminary findings from an 11 farm case study. Annual ASABE International Meeting. Spokane, WA. July 16-19, 2017
Oliver JP, Wright P, Gooch C. Estimating the economic value of the GHG emission reductions associated with on-farm dairy manure AD systems in NYS. Annual ASABE International Meeting. Spokane, WA. July 16-19, 2017
Oliver JP, Gooch CA. Effectiveness of dairy manure management practices at controlling antimicrobial resistance. Waste-to-Worth Annual Conference. Cary, NC. Apr. 18-21, 2017 (Video)
Oliver JP, Gooch CA. Effectiveness of dairy manure management practices at controlling antimicrobial resistance. Biocycle East Coast. Baltimore, MD. Apr. 4-7, 2017
Oliver JP Gooch CA. Antibiotic resistance and dairy manure systems. Dairy Center of Excellence, Cornell, Ithaca, NY. Mar. 20, 2017 *Invited
♦Oliver, J.P. Antimicrobial resistance from dairy farms: Evaluating the potential of manure management practices to control its spread. Agriculture, Food & Environmental systems In-Service Meeting, Ithaca, NY. Nov. 1-3, 2016.
Oliver J.P. Use of microbial communities to clean agricultural emissions/effluents. Dept. Biological & Environmental Engineering Seminar Series. Sept. 7, 2016.
♦Oliver, J.P. Manure treatment and antibacterial impacts. Applied Agricultural Engineering Continuing Education Series, Spring 2016 - Session No. 14. May 18th, 2016
Oliver J.P. Role of fungi in the biofiltration of livestock housing and manure storage emissiosn. PhD defense seminar. Aug 18th, 2015.
Oliver, J.P., J.S. Schilling. Capture of CH4 by biofilter fungi: A chromatographic isotherm study. ASABE 1st Climate Change Symposium, Adaption and Mitigation. Chicago, IL. May 3-5, 2015.
*Oliver, J.P., L.D. Jacobson, K.A. Janni, J.S. Schilling. Seed Grant: Microbial analyses to better target integrated efforts for methane (CH4) biofiltration in livestock systems. USDA-NIFA, Agricultural Science for Climate Variability and Change, Project Directors Meeting. Washington, DC. April 7-9, 2015
♦Oliver JP, Janni KA, Schilling JS. Biofilters: The Biofilm Perspective. Iowa State University Biofilter Conference. Ames, IA. August 20th, 2014
*Mickelson E, Oliver JP, Janni KA, Schilling JS. Investigating the relationships between varying filter media and microbial populations in biofiltration processes - Testing nitrogen as a potential driver for differences in biofilter media decay rates. Mycological Society of America Annual Meeting. East Lansing, MI. June 8-12, 2014.
*Oliver JP, Janni KA, Schilling JS. Developing a qPCR approach to monitor fungal dominance in biofilms colonizing wood chip biofilters. Mycological Society of America Annual Meeting. East Lansing, MI. June 8-12, 2014.
Oliver JP, Janni KA, Schilling JS. Mycelium in the biofilter - Accessing fungal dynamics in wood chip biofilters treating livestock emissions. American Ecological Engineering Society Annual Meeting. Charleston, SC. June 9-11, 2014
♦Oliver, J.P. Don’t waste it…Decay it! Growing edible mushrooms on yard and farm wastes. 20th Annual University of Minnesota, Southern Research and Outreach Center Horticultural Day. Waseca, MN. March 8, 2014
*Oliver JP, Jacobson LD, Janni KA, Schilling JS. Seed Grant: Microbial analyses to better target integrated efforts for methane biofiltration in livestock systems. USDA-NIFA, Agricultural Science for Climate Variability and Change, Project Directors Meeting. Jan. 6-9, 2014
*Schilling JS, Oliver JP, Jacobson LD, Janni KA. Seed Grant: Microbial analyses to better target integrated efforts for methane biofiltration in livestock systems. USDA-NIFA, Agricultural Science for Climate Variability and Change, Project Directors Meeting. Jan. 6-9, 2014
*Oliver JP, Janni KA, Jacobson LP, Schilling JS. Rot & Stench - Longevity and odor abatement potential of various biofilter media. UMN-BBE Departmental Symposium. Oct. 18, 2013
Oliver JP, Janni KA, Schilling JS. The role of fungi in biofiltration of livestock emissions - Full-scale and bench-scale observations. Ecological Society of America Annual Meeting. Minneapolis, MN. Aug. 4-9, 2013.
Oliver JP. What role do fungi have in the biofiltration of livestock emissions? Novel approaches to measure their presence and test their performance. 1st Annual Natural Resources Association of Graduate Students Research Symposium. University of Minnesota, Saint Paul, MN. April 12, 2013.
♦Oliver JP. Wood chips and microbes can deodorize livestock emissions, but how? A new approach to link biofilter microbial ecology to emissions reductions. USDA-Forest Service - Northern Research Station. Grand Rapids, MN
*Oliver JP, Schilling JS, Janni KA. Manure gas eating microbes - Fungal & bacterial biomass in livestock emission biofilter media ‘A surface area approach’. Mycological Society of America Annual Meeting. New Haven, CT. July 15-18, 2012
*Oliver J, Schilling J. Fishin’ Chips: Characterizing the Role of Fungi in Gas-Phase Wood Chip Biofilters. Mycological Society of America (MSA) Annual Meeting. Fairbanks, Alaska, Aug. 2-5, 2011.
Oliver J, Jellison J. 2008. Wood Decay Physiology of the Inky Cap Fungi. Mycological Society of America (MSA) Annual Meeting. State College, Pennsylvania. August 9-14, 2007
*Hastrup AC, Oliver J, Howell C, Jellison J. 2007. Variation in Oxalate and Oxalate Decarboxylase Produced by Six Species of Brown and White Rot Fungi. Joint meeting of Latvian State Institute of Wood Chemistry, International Biodeterioration & Biodegradation Society (IBBS), Federation of European Microbiological Societies (FEMS). Riga, Latvia. August 26-29, 2007.
*Oliver J, Jellison J. 2007. A study of the Fungi Coprinaceae for Bioremediation Potential. Mycological Society of America (MSA) Annual Meeting. Baton Rouge, Louisiana. August 5-9, 2007.
Popular Press
Oliver JP. (2017). Odor is more than a nuisance - Affordable biofilters can keep your farmyard odor in check. Small Farms Quarterly. Winter 2017 edition. (Link)